Scaffold Ga0070749_10022859

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10022859
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3945
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033757	Metagenome / Metatranscriptome	176	Y
F081205	Metagenome	114	Y
F097128	Metagenome	104	N
F104969	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100228591	F104969	N/A	KNKKERDILSIEILYDYKEELDELVSSEDFNRLMFEEAVATIENALRKNRKIARVFYIPNLDCSVMLDEKNFNQVLETAIKFYEQQEEYDKCAELVTLKKKVNEPRKRNKGGA*
Ga0070749_100228592	F097128	N/A	MSQEKEIKEALEKILGSSVTLRYDGSDPVDELKADFIKVMDIYEGVWKRQNDLLENEGLDFTSYDEQYFKVIEGFIHFCFEGVAADAILFYVYSRKDDDGTLHPFIDSKGNEHMFNTIDDLWEFLLYWAEEIMKP*
Ga0070749_100228595	F033757	N/A	VVYVKKITVDNYDEFLQMALNQKFTIAQTIVETVLNNLKTRKKQIPVFEIEVEGEASTYTLSVQKEEFLSILQTNLIHFENEEAYEGCQKIIEAINYLKTKNG*
Ga0070749_100228597	F081205	GAGG	MSKNSNKQRVDQLKEWDQFMQNEYPNYKERKKKVKFKPPQYMASEDEDLMDYYDGKF*