Scaffold Ga0070749_10014782

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10014782
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4978
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F020513	Metagenome	223	Y
F041182	Metagenome / Metatranscriptome	160	Y
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100147821	F041182	N/A	SDEIDLKDKAKIAEKLGTFESSRAPIISIEHVQNISKDEEVSADDALEDFMAAIRKV*
Ga0070749_100147824	F103134	N/A	MSYGKVISGGKQMSKGLTKGINDKLAGFEGENKRRAVVAGAVRKAFTQNPLSDNHTNNVNGGKFTVPKLPKNV*
Ga0070749_100147825	F001059	AGG	MATYDIEALKLDLPTAKELSQFVYDKVGVALDLIGKPKDEQYQVAKRALEGKNVPADYITGENPYVDKKDLVPEDPMPPVPEREKDLPERDSQVHFFGATNMPHPLDPQSDRKVHISFRKYENGAITFEVVGPLEKQAIGSRINKYGQNVPEKYSWLDPRSGEKLLRRADGTMTPAGRGLYTYCVGEKGGGIWPLIDREQVAISAKNIADPWA*
Ga0070749_100147826	F006264	N/A	MEDTSNIFRKKLPNQAEACARKVLEWLQKDLQGTRTLSAEDVFYLAAAAQTLLLVRDTYGQE*
Ga0070749_100147828	F020513	AGGA	MLDKQNIIIEHLEAPPANKGMIFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIQPVVAPGVDYATAIITKCLMPNGKVDFEFERFSEADALQAEQATEMVKYMLNSKNDSYQIIRDWAQDSLLHKNGIVMVSPLREPITQYKEVEGTRDQLRVFETLAAEKGLTPKRQNMRRIDVDLQGLMQEAVMDETGAGAADAVSANTIYRAKYKLTGYSTTVKVKHIAQHYFVCNPTISNIQDQDFLGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIIECCFSGSYVLYVKEVDFIPLASMCPKPIVGNFFGYSLAERLVPMQEYGTAIARAE