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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006802 Open in IMG/M |
| Scaffold ID | Ga0070749_10014109 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5105 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003378 | Metagenome / Metatranscriptome | 490 | Y |
| F022860 | Metagenome / Metatranscriptome | 212 | Y |
| F033780 | Metagenome | 176 | Y |
| F060870 | Metagenome | 132 | Y |
| F103171 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070749_100141092 | F022860 | AGGA | MKKFLSYVADQTWTLAGTGLVLITLSGPTLRQALLLTGVALVLHSVLTLTGGKDD* |
| Ga0070749_100141093 | F003378 | AGGGGG | MTDIMFKANATVAKFLDLGQRLFSLFLANALPAVTGGAVIGVSVAKSAMLAGFMACVQVIQKLAAASTDGELTKEEIQEAFGKK* |
| Ga0070749_100141095 | F060870 | AGG | VDGGWALVVAAVVTAVGGVIVALLQKFKEENHKDHAYVRGMLTMLYKSQSRIEGKVERVDERLSNHLDFHASEGMLDNERTVQQDGVESTRKIS* |
| Ga0070749_100141096 | F103171 | GGA | MSEQFSKMELKALARFLRKVYPGVTDQDDLWELIEKVDRLSKGKHARPDRWRGDSSSRS* |
| Ga0070749_100141099 | F033780 | GAGG | MTPCPWSLVAVHWIDAFDSTNGWINTKDYKPKPQHVVSVGWLWPDILEGYLSVTCSWCPEEEPEMDTVGMVTHIPVGMVQKVVVLGNPEL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |