Scaffold Ga0070749_10012957

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10012957
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5358
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1001295710	F017997	AGAAG	VNIIEQIVTAVLKWLTGLAKTPPTVEDAKPDKELKAKLLDRIDRSGG*
Ga0070749_100129574	F023575	N/A	MANSKGLALVYGAKGTITLKTPAGVALTSGAITTIESYDATHEADVEQIKDSDGEVVAQVSANERISLNVTFIPSASTFAQSKLAAGLPAVNGSATIASSDGVTIGGVSIDGDYVYSGGGSVKFTSSGKVMVTVTVTKYPSLAGNATVFDLNP*
Ga0070749_100129575	F010835	N/A	MNAVALRTERALVDWLAAQDWSASPLGTPACLTSYGHGAFADADLEDRMPDFPRIVVRASTAVPVHPLDRTCELDVSAVLKLSADDTSEPHLLAVVQVFENLLQYLYVDGNISELNADDTDPSGGFNAQFAVPTDFGINDTSERARTFTRSMTIFAAANAI*
Ga0070749_100129576	F013879	GGAG	MTPTVVVDTTRFSAAWREYLPRTKRSLAEAINARTFYLLLRLYCLLPPKSPQAARNKILDYFNRPVGERRRDKKTGKLVGRSRELRVVHLIAQAKNKKAGKEGLYGEKMREAAASLRRRAAGSVGYLKSCVVKGIKKLSPSFTQFGGTRRARKGSAGVRSIAANQALLNLANQYGLPTENVSVHRGSSAYAYNAKAGISPHSHVRMNIGLADNQIGKVNSIYAKAMQQAYDDEAKELEIHIRAKMEEAAEVLEKHGVVVK*
Ga0070749_100129577	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQVRLLVKLADWRLADSTLVTVDASVWSCDVGSNADRLLQENGSLILQENTDRLLLTFGKMIPVVGRLVTYDGRQLRIMSARRDGSGAYYVLDLGAKTK*