Scaffold Ga0070749_10010840

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10010840
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5893
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100108402	F023840	N/A	VRDEKGQLHVGLTLEDDFTLTRLKNTAHSLKGEDRDQYLWKTIFRFVCRERAYKSVMEEIGVVIDTNIDIFDDEEDE*
Ga0070749_100108407	F015724	N/A	MWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGIGAALPGACYMYPSMSQDMAMRMVAVRPRDSFNFLDFGYSIKSVTQTSGTTYAVELSSNFGPPISFFTGEILSDRFRADGTEKTSYNNYVVIGVGNGTTPLTPSFAPIFNSIFISLDTSNSWSVIDNETLASPAGLPTPGEYFTTEMRFGCNCPDYLAREDFNLYEYSLKRKYPYTLPQDLKPGSYDAGKDFLSSRESNSRDLPGFTRDFGFLYVKKLLDLPTYTDGTKNYSDPNLTYFAPRWCKHIYASFWDMQNRFGSDMFPPAWLAQPTDEPMDDRYREEFEINLLKQTTFEKRQQHLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFTIDQYDPFAPPDPAITPKVDGGTYNNGVLVSGAILIYDGGQYSNGALIPYPSYPSLINGGTY*
Ga0070749_100108408	F001215	GGAG	MASTSTNKQPLMVDRPFFRGAKFNNGSTVVSNPSNPDFSDLVQLVRVGDLPSEDGALVEDIFVVSAEGYPDNSGVRSAAFGVYVYAPNQSAPSTSAALLVSKFEVGLSGSTEGIIQRVELPATVAPTPQTGNTSLFFPIERGKSEAMYLEKGYILCLGYLGTGPAGSAATASGGLSASGLCIMAQGGFY*