Scaffold Ga0070749

Basic Information
Taxon OID	3300006802 Open in IMG/M
Scaffold ID	Ga0070749_10010073 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6129
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F036007	Metagenome	171	Y
F056576	Metagenome / Metatranscriptome	137	N
F070187	Metagenome / Metatranscriptome	123	Y
F080000	Metagenome / Metatranscriptome	115	N

Family

Category

Number of Sequences

3D Structure?

Metagenome

171

Metagenome / Metatranscriptome

137

Metagenome / Metatranscriptome

123

Metagenome / Metatranscriptome

115

Protein ID	Family	RBS	Sequence
Ga0070749_1001007311	F036007	N/A	MTLTHTLPSVVDISVEIGKVPSLNAFYASKHWAIRKKAKDKFKAEVLEQLDQYDKFEFKSVAVRLETNLGYDIDNCIMAVKFSMDALKEWGGVKDDTKVYFPKLTIIYNPELEKNTSKIFFTGDLVD*
Ga0070749_1001007314	F080000	N/A	MPKIVSLQDTGRMWKEFHILNIAFDNNDSGDVLAKSTSPSYKVGDEVQYTKNERGGIKIQREQSNYPSSNNSNYSPKVKQDNSEQIARSVVFKGAIDLVASGKLQVTDIPSFVDKYLSVVTGAQAQGASYANHFQESSPF*
Ga0070749_100100732	F070187	N/A	MATLRKYEYSPSQWATAKSKITLTNEEGETYYDPAKVRQVVELGNLVTTPAIYDEEGNELSPAVLSTKWSVDILWEGEPMTTAFESYEIWCAPMGVHSMGGVHTMLEWIETCKSKRPELFPEPSAE*
Ga0070749_100100733	F056576	N/A	MMTRTESVGATFLSTAISWVTIDINPILSGIASIFAIVLSCFLIYKTYLEIKIRKNQLK*

Protein ID

Family

RBS

Sequence

Ga0070749_1001007311

N/A

MTLTHTLPSVVDISVEIGKVPSLNAFYASKHWAIRKKAKDKFKAEVLEQLDQYDKFEFKSVAVRLETNLGYDIDNCIMAVKFSMDALKEWGGVKDDTKVYFPKLTIIYNPELEKNTSKIFFTGDLVD*

Ga0070749_1001007314

N/A

MPKIVSLQDTGRMWKEFHILNIAFDNNDSGDVLAKSTSPSYKVGDEVQYTKNERGGIKIQREQSNYPSSNNSNYSPKVKQDNSEQIARSVVFKGAIDLVASGKLQVTDIPSFVDKYLSVVTGAQAQGASYANHFQESSPF*

Ga0070749_100100732

N/A

MATLRKYEYSPSQWATAKSKITLTNEEGETYYDPAKVRQVVELGNLVTTPAIYDEEGNELSPAVLSTKWSVDILWEGEPMTTAFESYEIWCAPMGVHSMGGVHTMLEWIETCKSKRPELFPEPSAE*

Ga0070749_100100733

N/A

MMTRTESVGATFLSTAISWVTIDINPILSGIASIFAIVLSCFLIYKTYLEIKIRKNQLK*

NMPFamsDB