Scaffold Ga0070749_10008414

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10008414
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6717
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014903	Metagenome / Metatranscriptome	259	Y
F050478	Metagenome	145	N
F067110	Metagenome / Metatranscriptome	126	N
F070149	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000841411	F050478	GAGG	MKIKRVSKYTFDSEGHPINKRGKRLTNKITATFKHSPYNAGARVNWIHFEKEEVIR*
Ga0070749_100084144	F070149	AGGAGG	MSINNMPTIYELVDEVCARDFEILARLSTNQRNKFVDIIYSDILEGDSPEEITEDAIYDYVEEFIIKAISVSIDDVVDFNL*
Ga0070749_100084146	F014903	GGAG	MQNDITNIRYVEMTYDHTITFDIDEIANANNFIPSDIKEVECGKWAKLNITLKDGRVIEEDGCFYNSTPELKWADKETFYDGSYNELI*
Ga0070749_100084147	F067110	AGGAG	MKGLLQTIVGEAVKRGYYYGIDCGEGYEFTSEYFFQHPTQDLDLLCNQKPEDQYIGMDNLDEGHIFFFTKEQADRLNNAVGKVKFDSEIWKSEEEEENGDYYEGWILWSNWNDGVERVCDYTTNLDDLIGLRETTDKWEEMVTEFTNKL*