Scaffold Ga0070749_10008234

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10008234
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6800
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022895	Metagenome / Metatranscriptome	212	N
F036720	Metagenome / Metatranscriptome	169	N
F060729	Metagenome	132	Y
F060933	Metagenome / Metatranscriptome	132	N
F068898	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000823410	F036720	N/A	MDSTYITNYFTNGIESSFIMAAFFFLLLAFVTSKWFQFTIRDIGSDRTPLDPSWKFWWLDNYNSVISFFLMCFPIIVFTEDLVHWLGLNFLPNAMKTENPMYIYYIFGLSFGWVLEMILKKAKLIRNAQK*
Ga0070749_1000823411	F068898	AGCAG	MIASKAEIKTLVFSNNFDVNSIKDNLIQVVEWEQVLPLFGTDFYDDVVANPASYTTLIDTYLKPYIAYNVKAYISKPNHIKTGNKGAQTASGSNEVIANVEESKRQAMKMASRYKQQMISYLDKTKPALWKGEPKDDQIINKIIII*
Ga0070749_1000823414	F022895	N/A	MPANLSLQAVAGTNCPKTAGVKELYTIKVEDLPTIELGSDHDITNLVFANAGNGFGQINFKRGECEVTESMERSNEVNVNFSVANPTSTQRKELTAIKNACEQYMVARLYDDDRLLFIGYDEESLEEGFVSFASFESTSGRAKTDDNLFSMTMMADQGEPLRVLSGISGASPSPATTTAEIIAELKAATSV*
Ga0070749_100082347	F060729	N/A	VKLEKLKDKLYKLDLDQYNGMPLRMGNVLNAKKFVNTHILFLEANAGNITYICYYNRLLEFYEKAKQWIAEKH*
Ga0070749_100082349	F060933	N/A	MDKVIIGAILLIQSLQTESFKNKIIDVCLTISTGMGVYFTLPFQISTNFYAQEIFRSITSIVTAITILVISLFIRRWWSKRFK*