Scaffold Ga0070749

Basic Information
Taxon OID	3300006802 Open in IMG/M
Scaffold ID	Ga0070749_10006231 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7824
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (23.53%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7824

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (23.53%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F025982	Metagenome / Metatranscriptome	199	Y
F041147	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000623111	F008128	N/A	MEPVYVPKLTVSFAVDLEVEYNSFGGKTEEEITEALQDDLDDLLFELPHVTGVYTSCTNIQSNG*
Ga0070749_1000623113	F041147	N/A	MDTTSEPIETINQWQEWYRRHRVVAEMNQPLVTKDSRESMHDTSKATTTLKGSDNLLTDYCKAMSFQKAKEYFADTIAEFANELSGKELYKAFYAAAMDNMDAVEKEYNKAKQLVDMLRCNNVAP*
Ga0070749_100062313	F002738	N/A	MSIDSYGLSSEQYTEFFHKNVRLAAKLYLDTCTILNEEGVGNIDFKTVLDMYQEAVYTANDDCRRYQKSNNPEALKDGDLYNISPTREEIMEEVQSVNAKVEALTDYIGNLVTVTTAGLEGIATTLDDKVD*
Ga0070749_100062315	F001018	N/A	MAQITQAKLKELNVIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGELITQAKRHHESQLRSLKNLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCVTEEVTTTKRVVLRSMSGEVLSERTEPKTTTKTLPNLDAIRSAYQEGQQLPNGVKVVQEYAVRSKRIFSEPKLDLVSSEYPGELLPEDSSAN*
Ga0070749_100062316	F025982	AGAAG	MSCHEHAIKDFDLQLEMNGLQMEMLMEDGKVLDYHMDEYEDLEQKKLKLLVGKRFHQNACNAYWYWTQREKSGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070749_10006231

Overview

Ecosystem & Geography

Associated Families

Sequences