Scaffold Ga0070749_10003722

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10003722
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10169
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F003661	Metagenome / Metatranscriptome	474	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F007971	Metagenome / Metatranscriptome	341	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000372211	F003661	N/A	MDPTTAAAIAIIIAAGSEIITLLPIKENSWVQLILKALKVVFPKR*
Ga0070749_1000372212	F002317	N/A	MEHHEEALITAKPPESPFNQMIPALLTAAVVGLAGLFMQVAKLDQSVSTVAADIQELKNDSKERLSDLEGRVRYIEMSIGKSK*
Ga0070749_1000372215	F007971	N/A	MAVKSKTALGRVEHKAGRPKTTSQGMGQHSRPRRRGRKPLRGQGR*
Ga0070749_100037223	F004722	N/A	MSRPKTGRELVLDWLNREIRAARTADLQRAAAFLEWARAIRKGCAKQRGGARVAQANAWRKKVDDDVRW*
Ga0070749_100037225	F006109	AGG	MTRYVVMVEDRWVTAVYGPGKGIGFTRSKEDASSWVTYERAVAAARTVAECTNSPAAVHSIDEPAYPRSWK*
Ga0070749_100037226	F017122	N/A	MEVVPFQEQLDPELRLGEGRSRTSSEKAQLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPTTAAKKPKLARAKNGPRETARRRLKLVEKKNESADC*
Ga0070749_100037227	F043896	GGAG	MSQQIADWARQSWGEVIVDQNRVDLLDKLYFWDGRDKKDHPMHSTYTGLYEKYTAN*
Ga0070749_100037228	F003805	GGA	MRPIEHTTESCFHKAAQDKWLVDLFNKQDYRGLLEAALVLNTLHQLERTKVAWAIREAADNLAEQFGMDRDSA*