Scaffold Ga0070749_10002184

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10002184
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13168
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015083	Metagenome	257	N
F015341	Metagenome / Metatranscriptome	255	N
F019999	Metagenome	226	N
F026887	Metagenome / Metatranscriptome	196	N
F034557	Metagenome / Metatranscriptome	174	N
F035745	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000218410	F019999	GGAGG	MATAKLCERGQWKQAEDGSETVVDVYQIIASSETESITSILAASGLPAKGSSHAEKTSAILVDQDLNQDDSVRTVWHLNCRYSTAIETREDQAYGSQRTKGGMRSSSVEVPAFFDTYGYPLVNTAGDSYEGLGRKVRTRTVNVTHNATSIPNYIFNLSDTLNAAAVTILGTSYPARTCKLTDVNCPDEPVRDNAGDLYYPVTYNIEINPIGWQILLPNKGPNELIYQTRASSTADWSDDTKANYDSKLPTTDRRIIKRPIESEEQQNLGGEIWLDENGQAVTVTTLTATSIGTANMTAGSGAITMVTGTLPEKVGSLIRVEGAGLKGRFLESNLLSIASGGGSGYLTRDALEDVSGGDVYVSGVIVNEFLLEDVADWSSLPLPNNQP*
Ga0070749_1000218411	F034557	N/A	MTQNRHIVTDQEGARTIQRLIQSEGSVSTGGLAPGSIPTGQAVVVRLQSAITAGSTDAVTADVMELQGGSWQTTGATIEVRSLTGQAVSITGRRIARRIGRHGWGVVET*
Ga0070749_1000218415	F035745	GGAGG	MSGGETAGNGQWPVQVTRTAVDGLDQCQLESDAVDAAGAELDQLLKTLRDRIERLYMCRRSMSLSEAADSGDHSDALVLQTTLVELEAYGGRLPDLIKGINTREA*
Ga0070749_100021842	F026887	GAG	MPSPIATAAAAAREASRRARGETVTFTRGAYSVSLLAVRGSTAWDRTAPFNGVRIGDRSTDWLIKQADLVDSGAAEIQPQRGDEISVDGVTFRVMPYGPDNQLWMYHDRDRKYIRVHTKERV*
Ga0070749_100021843	F015083	AGGAG	MASRSATLANALVTAISGWASLPSGVTVARVRSVTHLLVDMPTASVGRVAVIVSSVEDQSNRGDVAEDVSVGIVVIGNCDSEAVAQSDSWDEFTEDLRDWLRTSTTFKTIDLGGGLGAQRKTVSTLTVVDADMLDESEIFVSVTEGVWFLSVGARS*
Ga0070749_100021845	F015341	AGGAGG	MVDAVAGSILGDDCKLYYSATLGGSGVLTEIPVIIDDTLASERRAVESNCRGDAEIGELIGKPKHAISGTILAKRDTSGVGATFVALRDAYVNGTILHFAMATGDITHIGQYVFRLEGRLKRFEQTNPDNDTVKVSFEITHAGENTYASNFSTVTS*