Scaffold Ga0070749_10001807

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10001807
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14438
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048283	Metagenome / Metatranscriptome	148	N
F063654	Metagenome / Metatranscriptome	129	N
F063657	Metagenome / Metatranscriptome	129	N
F066734	Metagenome	126	Y
F072296	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000180714	F066734	GGAG	MVQNALWVAFRGVLACISTFRRRWRRVIAATTMGIAIVRATIWVAKAVASAGTVDTALNLIGLGEYVRPFEDAVDNVLATVVSVIVTVTPTG*
Ga0070749_1000180717	F063654	GGAG	MTTTKRETVAPRMDPTRYTHSYRVEAVPQYRGFAVNKGRREVHYLGLIRWDQEDREQRNSECRQIASLTESDGVYTISVVGPLTVRDWSAAKLAKARAFNGEWRDVWSGDAILGVTLMEAVTRLRALRDAMQEDADAYRRGQ*
Ga0070749_1000180722	F048283	AGGGGG	VEIEITYTPALIGVGPEVGDDVNASCDAFEAQVHREVTASYPDADVTVTRDHGHLADLSVVTHGVEDRPGVLTVRQAVWSDVWDLISPYGRYRRPVRGGVVQPSVAVASAERGPSGFAMLVEDVYGDSIIEVDADEVLAVMRSGFGVAIR*
Ga0070749_1000180724	F063657	GAGG	MNGDLMDDVITEVSVTGAVTTDGRLRFRSPLDVEAWAHDHLVARLAWEFLIDGADNGVPRDTDEALERVQTRYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR*
Ga0070749_1000180726	F072296	GAGG	MSMQRPRRTAVPSFQRSASTGEKVDYEIERLCGHIEVIQIFAGSNPDTSKWVQAQRDKDCRECYQAKMVEADQASVDAGKRVALEGGPKQVPWAQSVRQGRASEMRTWLESVTAVGAGAVKAGRLSKADYDAGIADVRAGFTDLMMGVEFSDDDYDHSGYAKWWIDTRKDALDTIIARLLPDRDILGTGVFTRLSADGWTPAEDATLLPVEVELEPEPEPVQRTATPLPGTAPEPFNPHARGRGRGPVKVVSGPAAATWQREADDLDLEDAPF*