Scaffold Ga0070749_10001705

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10001705
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14856
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015477	Metagenome / Metatranscriptome	254	Y
F041743	Metagenome	159	Y
F105298	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000170512	F041743	AGGAG	VSLQTIIDNATYVEFDIREQSGSTLSRSGHYKTADRNVNVYSFKVGMHDGLKYSTSRSIIQDVYSTGSTTEANISLNNNSGMNYLTEYQGDLTTGQQAELTLNSTSGSEIYVDQTGITGNTSGYAFIFKKGDFIQPKGNTDTYRYPYQVTSDVAFNIADSNTTIPVHRPILSQSGVALTSGGIKVGNDVRWQVKITNLPKYTIAPHDRIVFTDDFELIEVIT*
Ga0070749_1000170517	F015477	GAG	MEIAKAQNEVRCAYKDVEKASNRLAFCLSAVHNLKDRLDKDLQE*
Ga0070749_100017056	F105298	AGGAG	MSGRVLDFKSYVGGADNVIVEEMFPSTQKAYSYDFGVDVSSYSFEADYQTIVVDTVTYDRVTGDPNFTDSTVVGYFANAEISGSNINNAQASAGFVTLTIPANRYTGNIIPDARSNVAMTVVGFTWTDTSTSPTTSDGHRFVIMERYEPDVGIGNPRDEAGFTAIT*