Scaffold Ga0070749_10001382

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10001382
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16408
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008878	Metagenome / Metatranscriptome	326	Y
F010762	Metagenome	299	Y
F022116	Metagenome / Metatranscriptome	216	Y
F025689	Metagenome	200	Y
F036198	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000138213	F025689	GGA	VHTMEAQFHGAANAAQLRALHAAADWGGLLEYALLIAEQEASQRSQIHWLAQEASAALRTGLEQWHLDAAEELLRGRRREI*
Ga0070749_1000138221	F036198	GGAG	MINPKTEQRRDDYLQWLYQQSGRTCSTYTGLYQQRIAELIKRDMAEALGDE*
Ga0070749_1000138222	F010762	AGGA	MNQTTLDIAFKEWWETSYGRPPGTHAVMTHVAFAAHILELLELMQDDQSEN*
Ga0070749_1000138224	F022116	AGGA	MTEPFLTTDELAARWGMKPAAIKNQRARGIGPAYVTAPRIGLPAGTPRVRYPLAQVLAFEEANGITPLN*
Ga0070749_100013829	F008878	N/A	MNRLADYIALAVAVHGVALIVVNLTPTPKDNKALRKTAKLAVKLYRAIEVVAGVVTPLVKR*