Scaffold Ga0070749_10001332

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10001332
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16761
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.00%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F016269	Metagenome / Metatranscriptome	248	Y
F017473	Metagenome	240	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F024111	Metagenome / Metatranscriptome	207	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F027835	Metagenome / Metatranscriptome	193	N
F029927	Metagenome	187	Y
F048249	Metagenome	148	N
F055727	Metagenome / Metatranscriptome	138	Y
F082629	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000133211	F020115	N/A	MNNTMTYEQFEILRQWAERVANTANDTDTHIRSLDLVHDIAGILANDEHFLPRL*
Ga0070749_1000133212	F025729	N/A	MDKELIDRLEYVEETYAGETETWQDPVTGDYYHVPLTILRDWENMEKL*
Ga0070749_1000133213	F018534	N/A	MALPTLTDVLTSWDKLTVIGMTPDRHDSIMTLAPVGLNGVKVAIEYRHQIGASSGVCSTIAYLVAYDEYGNRVTVRNQTYGCFDDEEKQFHQWFAKKMEGAMEMDARRRRDLSDGIDMILTS*
Ga0070749_1000133214	F048249	N/A	MKTSIFNTRIIRKGSQVLYRGSWGRDPQKIAEVIAIEQTQGPNEKYGDEVDAVSLDDNYVLTLNNGHWCYSYQVDGLVQLPDTESVAK*
Ga0070749_1000133216	F027835	N/A	MMKTQQHIDALYERMKTAGGFECALIMAYMKADGGNARLLEDAFKGSRFDLTPKPKYNHGVNVLRNAAYWSGERDEYLNDNKTAHQIIDEYLQEREALDEIVNQ*
Ga0070749_1000133218	F055727	N/A	MYNHFLEFSVNEMVDAYTYFTLIHDYEGCRLVGDAFAQNTSIDFQNF*
Ga0070749_1000133220	F024111	N/A	MNQPIFAFVFPFGEHGGEFRCKRNFVDAESAANWAVDIILKEGDDYCYFKEVESASYVFEPACESHTVVRWDDDAPTWEMYDVID*
Ga0070749_1000133239	F082629	GAG	MEKSNKTKTTQEVLQSASQSSPSGLIYWDDYNFDNQSDTAGYLKEDFNIIYDAPE*
Ga0070749_100013324	F029927	N/A	MQPVNTKSLFHVLCKTLDQLDREEINVNQASAVSKVVGQCANLLNYELKRAALMTNDEFRLEHRNLESKNFDSLPE*
Ga0070749_100013326	F008453	N/A	MSKYANNYAVYRIFRDHNKRPKVLMDGLTREQAQTIVKNTPSYEDSMVVFDEEPKSKQWGRR*
Ga0070749_100013327	F017473	N/A	MKNERKLEHIRNIAFCIKNGAAGYVTDNFRIDDLPAPQTSGTLSQQDAYARGKARIIFDAFIEQNPNINE*
Ga0070749_100013328	F016269	N/A	MHINDFMFICEEYNIDPVLASEDEGVRKILKTPTSDVKQQLMLSGYLHKHF*
Ga0070749_100013329	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKTLEAKGKLVAILMDDDNAESCTTSTDGTESVINYDVDDREHEIVKVIEVKPTWPENKDIREYLVWDQMNCEAPFDGDYMPTDLSVVKDLCERQEAVADTFDVEAFHEFVRDLWYGNTAMFDADDLCIYYFQMPKVQLPSQPVEFKS*