Scaffold Ga0070749_10001247

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10001247
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17263
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.91%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F019119	Metagenome / Metatranscriptome	231	N
F025233	Metagenome / Metatranscriptome	202	Y
F032245	Metagenome / Metatranscriptome	180	Y
F037129	Metagenome / Metatranscriptome	168	Y
F047578	Metagenome / Metatranscriptome	149	Y
F060730	Metagenome / Metatranscriptome	132	Y
F077051	Metagenome / Metatranscriptome	117	Y
F077197	Metagenome / Metatranscriptome	117	N
F078606	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100012471	F078606	GAG	MIRFKMFIVACVGSVLSWLLVKTALIDMNFLQFLAIEFIVGFSHYAYNDIKLKLQE*
Ga0070749_1000124710	F019119	AGG	MEKDIRREMESLSAQIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKHMGYINDVEIKNMIHMLESEDQDNLHMVTLSIKNFRKLRLEEHGEYSKVNQAYWKVAKNYAHEILNHEIFMQTMAAK*
Ga0070749_1000124712	F037129	N/A	MSVNKKNYKIVEEQYGYETRYVVKKRVLCFFWKTAKNKSGSDSVHITKRSAQAYINFLK*
Ga0070749_1000124716	F060730	N/A	MGRMKEYYMEIMEANDGKIPEELTIADVARMKELRIYNWQEYEREQEKIRVFKIKQENPREITKAAQTKEYWDNQFKRAETKIILKGE*
Ga0070749_1000124718	F047578	GGA	MRVICIDSTNKPAKVPVEQWIKEGEVYTIIKIVQMGLQNGKHGVLLKEVQMSADCFPYEYYDADRFIPLDLRVYELQEEEPEVLEADLDLI*
Ga0070749_100012472	F032245	N/A	MQEVFNKLIKAGLTPNSFYVLYCMYNKVVPDKSVNASLEVSRLKSGNYLTENLELSGNTLKFIQEIEGYFKKSKKKTSKALMGDSFLENIKTYNELFPATKLPSGVYARVNVKSLENAFRWFFQEFDYSWDTVIQATELYVEEYSITKYNYMRNSQYFIRKQNTDKTWDSTLATYCDMILRDDYQQTVFFKENIV*
Ga0070749_1000124723	F000716	AGG	MAPFFMILKMYIMEKLKKQVRDYQLYAGKTYVQYESDGYTAYQNYLYKRALYGLSALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQVTIKYSNLIFEKLFPKSPITQFLLADNETDEKFKNTLTFKDLGIEKKDIITIFIAEGILPKNFLDLKDAPLALPRLKNDKG*
Ga0070749_1000124734	F025233	N/A	MHLVIANLMFVLKLHSGIIIPTDDVDGRTIYSIPSAGIEYAYKAEIIQYLETGKFNYDEDLED*
Ga0070749_100012477	F077197	AGAAGG	MFLPIEFQDSDGPYFEHLNVVHITRISFINPRNPDAGARIHLRTGEVLSTKMPFDQLSQAIDEAWESASALVLSTLLSEKAQLIPSGSLQSGEKKVILGDSEV*
Ga0070749_100012478	F077051	N/A	MTESDLTNLGFNKVEVNDLESQNGYDYFYYTLEIFENLTLCSVDSDRVQDGNWYVMNLDWPDNFRLQSPQELLSFLQTVGYQRV*