Scaffold Ga0070749_10001215

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10001215
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17447
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (82.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037219	Metagenome	168	Y
F050997	Metagenome / Metatranscriptome	144	Y
F053263	Metagenome	141	Y
F060871	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000121511	F053263	AGGAG	MSDYITVAGIVQFDPRTRQAGDKEVRDVVIRAIGSNKNFSITVWPEKSGILINKGDFLVADGKYSSSVGQNKAGEQVTYHNLSATTIIRLPGEDAAPVASAPKQAAAVTGDDFPF*
Ga0070749_1000121512	F037219	GGAG	MSLPPNRSKQWKDWEREVARDLGGTRTGPRGFDVPDVVDLPMEFAPECKYQKRLSLKDADLKQAAHNARGKEWSVFLREAKTGRRFVVVPYKTFLKMWDAYTKGETNE*
Ga0070749_100012152	F050997	GGAGG	MSEGDIQVILHRLDELDARLCQIHEEVRRTNGRVTDLEMSEAKWEGEKEGKRMQMMIATSVISGGILAGLVWFVSNSIN*
Ga0070749_1000121522	F060871	AGGAGG	LIPETLTEKFHPSLVKKNQSNQDYVAIDGYINRLNDVLGHAWAWQINTWEIKDAPPTKSGKPQYMAVVQGTLTIILSDIGVISVGDEDDGEPYLTTQKAMISRDGIGANVNFDPDTAVKSAQAEALKKACHQYGIALYLWDAAERDFVELQRQAATNDVALKQLVVAYAQRVLELEPGTMPDGEQMLDVLGMSDWDPVVARNNLKEKGVL*