Scaffold Ga0070749_10000893

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10000893
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20230
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017994	Metagenome	237	Y
F033757	Metagenome / Metatranscriptome	176	Y
F047679	Metagenome	149	N
F080032	Metagenome	115	Y
F081205	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000089326	F080032	N/A	MSEKKGHTIKLHYDFPTQRCCEVYVPNLEDWFRVTCKEFRSWVGKRRILHIEGDHKMKTDIKSEYKDYDGPTYYYDSNKKINPSKFPQNKVAFLHNKDPRIAKRRPYEQF*
Ga0070749_100008933	F033757	N/A	VKHIKVTNYDEFLAMAQTQKFTISQTIVETILSNINTRKKEIPIFEVEVENNGDTYTLSIQTEEFINTLETNLIHYENEEAYEGCQKIIEAINYLKTKNGQKN*
Ga0070749_1000089332	F017994	AGCAG	MNLEEFVIHKTRWLNGFSQHMKLGNIDFKTYMLMNGLSEEEFDILNRKADEKTSR*
Ga0070749_1000089346	F047679	N/A	MKVIDAGGSHILADQEGDFYFWIGETVYYLTEFTKTLGNRDYDGVAHISNTGGIGIKIDEAEEYVEYEIFTT*
Ga0070749_100008935	F081205	N/A	MSKNSNQQRYEALKEWDKYMQNEYPNYRERKRKPKSKPPQYMTSEDEDLEDYYRGK*