Scaffold Ga0070749_10000561

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10000561
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24909
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (22.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004093	Metagenome	453	Y
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y
F032634	Metagenome / Metatranscriptome	179	N
F067666	Metagenome / Metatranscriptome	125	N
F079966	Metagenome / Metatranscriptome	115	Y
F101033	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000056112	F079966	N/A	MAEVVKSEGLVLAITNVSGEVYPFACTKNASISITRDFLELAPRTNGIFREYLANRSSFTISGDGLVKMVQTYMQPITFFDTFIEGSDSEYVGYLDMIDASGNYKVYTFNCIIQDLSLTSTVGQSATYSYTLQGTGPFTEISEIDSYTVTASYIPARNPTSYKLVAVGIEGVWYYNYIVTPAGGGLYDILIGSQFNGKTAKAVYISI*
Ga0070749_1000056113	F101033	N/A	MEANFWLVLGIQTIAFGLGAIRIYTDMKIKLREHDLRLRTLEKKEDETVEQFKEIMQALNEIKLQLKDKMDRI*
Ga0070749_1000056114	F067666	GGA	MIGEHNMAPIKKGDTYVVTYSFYEDECENTPLDVSTYSFKLMAKNSSGSTMFTWTNSDFVVIDNYTRKITLTPTTTAAYTAGEFVYELEVTISSNKYTWMQGYVEVQNQITS*
Ga0070749_1000056118	F032634	N/A	MTYKELLILIENIKLNIGQQETKGQKKLFKIYEKLKPSIDEFQAKIEDIRLDHAAVDDKGNLILNDKGEYNFNKEGLKKLKAELKKLEDSEFEHKVIEVANPGGLEPYWFLEGWTNGVQYVKPEKEQEEEL*
Ga0070749_1000056131	F004093	GGA	MIYQTIHEIMNPFDVETPIGYGVALFMISGSIHSNPQFIVRFYHTGELRTIDQNDIKVYGNPSNGEKLVPNTITVKPC*
Ga0070749_100005616	F010155	N/A	MKDSSNSVRTIYVNALNGNISYNGKDVPVYGQDPFKTLPQNYVIISSITEQANNTNHTFQNIVSVDIDIFSEQYRVNDLSVVDDISGQILNILIPDTAIDGFSDSNFVVYPMSRTNSLYLPLYNGDNYVARKIITINNLVNQK*
Ga0070749_100005617	F011844	N/A	MAQVQGSLQNIEIDVTGGSSYLNLVCLRTSSVNSTVDSTTDQTNCGVLTAVGEPQMSLDFDAICETAPSVSQVSYSSLLTAWANKTKVSVRVQNPVVTGSSAGAAYYHQFYGYITSLTMNQSTTEFINFSGTIASTGTIDVTV*
Ga0070749_100005619	F004112	AGG	MIRGFEDKKIDSYKQTRLLMFTMVRLMGDPKSAPKTPEQLWNLPGDEDINKIDQEEYKNIFKRLANE*