NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070749_10000444

Scaffold Ga0070749_10000444


Overview

Basic Information
Taxon OID3300006802 Open in IMG/M
Scaffold IDGa0070749_10000444 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28135
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (31.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035747Metagenome171Y
F067693Metagenome125Y
F099215Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0070749_1000044410F035747N/AMYIDNTQLDREFMRRMIRAYEQDLLQLVSETPDHPGGDWAREHLAKLEELRGLTFSSFTQTVTF*
Ga0070749_1000044411F067693N/AMATIQHLCARNDVNGNPQRLYVLSVDGEQIAAWDEGYLGHHAMPGIWRDAAYNAERIDCSVALYRKLLRTLPSPDWAHDVPGYAHLREHV*
Ga0070749_1000044453F099215N/AVGYIPLSNYKYDTGLHRLQSGPISEGYIVVSSGIVDTGADVGIVTPGPMTSGVYSTTAWREVPPAISGYWTDFQDSDYQASGVLSVYNGYRALSVTAIANAKVQTSLGPEFGVRDAGKYTYFGGAAPDNQDYTPYNTPEGNTAAEGKTGGGVTHGRYEGGLLTNSLGSQGTANRSEWVYNPPVYCKTYTETVRSSVPGLMSSALRYIYRGGATRYVSNYGSIYLQGSESVRNLVRTFSPSVNSSNQKSF*

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