Basic Information | |
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Taxon OID | 3300006802 Open in IMG/M |
Scaffold ID | Ga0070749_10000444 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28135 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (31.48%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035747 | Metagenome | 171 | Y |
F067693 | Metagenome | 125 | Y |
F099215 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070749_1000044410 | F035747 | N/A | MYIDNTQLDREFMRRMIRAYEQDLLQLVSETPDHPGGDWAREHLAKLEELRGLTFSSFTQTVTF* |
Ga0070749_1000044411 | F067693 | N/A | MATIQHLCARNDVNGNPQRLYVLSVDGEQIAAWDEGYLGHHAMPGIWRDAAYNAERIDCSVALYRKLLRTLPSPDWAHDVPGYAHLREHV* |
Ga0070749_1000044453 | F099215 | N/A | VGYIPLSNYKYDTGLHRLQSGPISEGYIVVSSGIVDTGADVGIVTPGPMTSGVYSTTAWREVPPAISGYWTDFQDSDYQASGVLSVYNGYRALSVTAIANAKVQTSLGPEFGVRDAGKYTYFGGAAPDNQDYTPYNTPEGNTAAEGKTGGGVTHGRYEGGLLTNSLGSQGTANRSEWVYNPPVYCKTYTETVRSSVPGLMSSALRYIYRGGATRYVSNYGSIYLQGSESVRNLVRTFSPSVNSSNQKSF* |
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