Scaffold Ga0070749_10000428

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10000428
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28571
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (42.59%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y
F003889	Metagenome	463	Y
F019817	Metagenome	227	Y
F056537	Metagenome	137	Y
F087064	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000042814	F001190	AGTAG	MTVAGNTTDDYFDITKFEELLNRLESSKQRQQRQKSVEGRRDIFATGLAGMMGNF*
Ga0070749_1000042821	F002721	N/A	MAKDHRLDLGRYVTNPFNRRGQIGKNLNFEELFRAKPDSGQYPWNPSRFTERDLTNRMMTRKRELNPELNFVQNSPFFDNNQEVNSQYELFEGLGRFNRPESYDFNEGRALTSQRPEDQPDFNPVWVQAYRLSPTIKPGKSAKNPMPRMKNPDPNGYLMAMAETRVDNEAEGKMSISQLLDRKGVMKNLPSKGTEQYEGTKTADEAPEEA*
Ga0070749_1000042824	F001806	N/A	MDAGTRQKRVEALEAIKNKAMEMAAQGSDSDTVRSFVTEAKTDLAYELPDEEAFTKAARATLAYKRKKG*
Ga0070749_1000042833	F019817	N/A	MSTQLQNQLPALTINQRNIYTYFLNHRRKNGKSPCFVPRLPSQSSRLDQYLQALAKLEEYGLIRVDRSAANYTAWIISEPKESICT*
Ga0070749_1000042838	F001120	N/A	MSQPKSPLNFDRTIGGFNITEHGVKSYTKSIKLGPFQLTLNARKSGVLGSISIPGTGLSKRNIKLF*
Ga0070749_1000042840	F001807	AGG	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFDPEEWAPALCEATIELDPEEPIPLDEDGFCRYLDQLDPQWQVLSPDDI*
Ga0070749_1000042848	F087064	GGA	MSTKRQYTYTIGDRVAERPKAHGIFAVRNEVRDRIQQYRSQRYGTVVGLKLKPNKSGAKQKFLMIRWDHLQTPTEHAQMRICPADQLEKLQSEGYGFEVE*
Ga0070749_1000042852	F056537	N/A	MNNIIYINDHILSVSIDTKAMTLVYRGCKYNQEEQAKKDRAWWNLVHRPWNVLVYRNICYFPFVTGGQIK*
Ga0070749_100004286	F003889	AGG	VTVGPEYIAIGLTAAVSALTGGSWVANRILDRQKEKIDQAFSYISSQKRRIDCLEDEVKQLPMDYVLKVDFLREIQEMHENFRQINNKLDKLMEKLLSK*