Scaffold Ga0070749_10000352

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10000352
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30657
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (82.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F040626	Metagenome	161	Y
F057213	Metagenome / Metatranscriptome	136	Y
F058146	Metagenome	135	Y
F099170	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000035210	F057213	AGGA	MLENNDIVGSDSALAEGQVGDSQNLSNDGRVNAGSIRKSTTNNILNALSSASGQQFDSVEAAIGYIARTASQKTNVGNEQPVEPRQVGSKRNVRSNESNDLREQFAKLQSDLQAKERMLRQKELDTEILRTMGDKFDNDFADYAMQKVKSNIKFGRDGSYTIVNSKGQERYGMDGNPLTIQGLVDEVAQGNPKLLKGANASSGSGLRPGNGNFAGAPMEAIPDYSRDPAAFNAWAQKRGLGKGVGLKGAKVTASVSGTSKTIL*
Ga0070749_1000035211	F011761	AGGAG	MAYVLNGANSEGDGFTFAIANFALRAMHESSGLVDMTTVVAPNQGNQYLVPNFAPITYQDYNPNAAPGTSTSPGTGFGAASGAAQEQNPALGQETITATPAVAATAFDVFYAWTTSFELAATLGAELGESYAEKVDQRVCAAFTTFKATPGNTNYSPTPLDGFSRPLQLGAMELAESGTTVTPAAGGTNGFSAASVLDLIRLVKQNYKLARLPGSPIIVLDSNGDAEGSVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGRIESVYGCQVMFTTFLTTDSRTFLSSGPFSVLVGAYFHESAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGAADLRRGGAINIQQ*
Ga0070749_1000035212	F002260	AGGA	MSVPFQRISNATVRDIIFYDPAAERRASQMQVDWDNYFNVGSQEILYQLEFGWWPKYCDTVFGATYYTNLPNGALISSFNPSQLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNDVDKANYDHALRRYEFEWEKALQLMNFYDLNNDAPNGPTTKLEENYVADVDYFNGDRRYF*
Ga0070749_1000035215	F003807	AGGAG	MTDREVWLKTNEEKLRSLIADEAKMMPMLDNMMATVKQLKAKQAFRLALLNQLLEEEVEDSNKYSGN*
Ga0070749_1000035216	F058146	AGGAG	MKLSQLTAKPQLVEVSIDDEDTVKEFGEALTFHTWDRQPMDVFMKLASADHTNVGNIIDVVRTLILDEKGKEIINKENMLPTHVLMKSIGKVTDILGK*
Ga0070749_1000035217	F040626	N/A	MALILLIDSLGKRYGMLPTEALLRANTFDLYVMDAVLTFENYQHKKAMNNGKEVVPEYSQDELMGMLNIAKEFGS*
Ga0070749_1000035229	F099170	AGG	MNMLETLIAFIKSLPAWLGAVVEVMIVAIVFLTAVTFLAGVWCGLRIVGKRAQSIKEITFFPPKIVFLDKED*
Ga0070749_100003529	F026558	GAG	MQAQELLKKNPIYGTLYEQMLAYQYAYLGGYVFKQYVRRKRPSEDSQLYLDLIENTVAQPICRYIVDTINDVLFEPGIKRELKFCTPTGAYINPDNCEWAQLMLLDADLQNRSMNSFMENVGDLTSIFGHCWVFVDMPKIEEGNLGRPYVVSINPLQVWDWEFDYYGGKPIIKHVKICESETESHWYLKCYYLGTDTTPSYWVGYEVGKAVDKNEVREIGRGEYPAGMSIPGFIAYGRKDPRRIDVGISDIDSASDAQREYYKLECESYTSIQFAKTIIRADKGIAIPVHAGAIVRASEGQVETIPVDTGDVDKVIAKQAQILDQIEALTGLGGLRNTKNQIASGVAIIEERKQLHRLAKSKARLMETVEEMIFTYASRFMGMRWAGEVHYNTDYEAHDTNYRMALMKEAKALMPTNPIIDSLIAKEIIGMLAPPEAIPQYEEAFINTITDPQVRTLMTDDNEQVLSRDLGNQIPTREEFGERGVPAESDEASPDGDYVAYNGTGGPGVPIQDTGQSYYTQQAVAVQLTGLNSGR*