Scaffold Ga0070749_10000121

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10000121
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44092
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (44.29%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F004232	Metagenome / Metatranscriptome	447	Y
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F015354	Metagenome / Metatranscriptome	255	Y
F029798	Metagenome / Metatranscriptome	187	N
F038648	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000012110	F002227	N/A	MKLTIQSKTNAQTIIDLFNAIITGECEEHQATPMSIYDETKHICSIVAANGEQILELVIEREVGDAFVEGEEKQ*
Ga0070749_1000012124	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFNTTSIEPTAAEEWSAITLATGENGGACDVTYADVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQATSELTQEMLDVTAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPQFRDDLRYADMGSGTGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNPSWVSAPYEAAFVVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLNVDCADPLEKKGQHYAEFIHAAEPIFTNQGMTIIFRRCTGALTTIICS*
Ga0070749_1000012125	F038648	GAG	MPKFMLPEGVEIPENLAEGEAFQTMATIVLGKGGKAELIEVDGVAIPGYEKAAKNKKMKGGEEEMEEEGEMESKGGGGRESFIAEVMRRGQGPMMS*
Ga0070749_1000012127	F029798	N/A	MANISCTDAASLIAEAWGASCKSPRERNLLEIGLLWEAATLGGSADITADSTVVTADSTIITADMTEFI*
Ga0070749_1000012132	F015354	AGG	MNPNIASLIRHILTAAGGFLVAKGLASADQVGEFAGAIATIVGIGWSIKKNAGGEKKAE*
Ga0070749_1000012136	F012040	AGG	MNLPEINLSQWISDGQQAELAKLLANPIVRMALRIVSESIPVPMPGHNAKESDIVFAAGVTAGYAHCLENLRKLAANQVVSEPEATFEKQY*
Ga0070749_1000012147	F012111	AGG	MSERAPRRYTDGTVTFEGGIDMGVMPSEIDKNQVSFAINSSFREGFVSPRPGFVQKDYDVCLTITADNAIVTADAINVTADGWSEECYGPDEIGGVFQCALPYIADNGRTYILALISGEVWLYDTQLNTFINLSVTDDLKNPSNLLDGWMVQAENFVVIQDGFSKPLIFNGANLRRAQPDEIKCGRVMSYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITSMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDAWKNLNYPIQAISLLTSGALGARSSITVNGDVFYRAVDGIRSFIIARRSFSDWGNTPVSNEMLKIVENDQTDLLWSGSAVVFDNRLLMTTQPVYDNDGVYHRALGVLDFDLITSMRKKFAPAWAGIWTGLKVLQIVKTENPYGDQCWIFARGENGNIQLWELTKTGRFDVNLSEQKEIQWLFQTRAYNFEVPFGMKRLDSGDIFIDQLEGDVTFEARYKPDQYPGWIEWHDWAECARINLCGFQMDCLPITNYQPQYRPKMRLPTPSDTPCNSTISTPARNLFEVQMQLLVTGYCRIKSIRVHAYDVQEPVVGDCRTFSPACSILESCDQNPFFYSSE*
Ga0070749_1000012149	F005740	GAG	MKLIVSDIQAMIARVIGTCTDDSRVYEYINQACRRLLHKGLWAGAYGRFTIFTNNGCITWPRQIETIEAVADCCAVGTVRNQWFEFQETGFGLVNGGGQVCLGNQLLDRGTVVSYRDLSGGTNNYLRVYPGDPSDVGKTITLQGTDNNGQWIRTQSGGVWIDGEKVTLALPYVQTTKKFTTLTGVIRQATNTVSRVYEYDATTLAETDIAVYDPDETLPQYRRSYLGNRCNANEDKPVTVMAKMRHINASTPNDYLIPPCADAIKLMVQAIRKEENDLLNEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGAGQNGGGLYQWF*
Ga0070749_1000012162	F004232	N/A	MKTIVACDPGVNGGFAIKTQDGIILLPMPESLPDMAQMITGFKTTESHFWIEKLPKFVSAVTPAATMATLHENYGICQGLAYAYGYALHRVEPKVWQEPLGLGGRKSCATGPEWKRKLKSKAQELYPNLDVTLKNCDALLILHYALGGGR*