Scaffold Ga0066660_10000540

Overview

Basic Information

• Taxon OID: 3300006800
• Scaffold ID: Ga0066660_10000540
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13613
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007493	Metagenome / Metatranscriptome	350	Y
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066660_1000054012	F007493	N/A	VIGTSSALIGAVVLLVVILVWIRADLRSRHLPSVLDQWLPDQGEAAEVCPPEFVSQIFSGQDLRFISRLESPDLKRHFLRERRAVALLWVQQTSAAIRRIMRRHLEASRLSADIEFATEARIFLQYTQLRLICCLLILLIELAGPQRLHGMALYTDRLTQRIGDVLREFASGARLREMDGA*
Ga0066660_100005408	F026411	N/A	MKRQEQKKKDASEGASTGTECRAEFIFYGRNQRSELRSVEVLGDYACDFRRPDWAHRCSDWNFGQNPYLNLFLCAKHAREFGLM*
Ga0066660_100005409	F027294	GGA	MRIFRGFAILLTVALISVGIFILYDSMARRSAAASDSVIAGAVLLSVALALLYFLSRPAVK*