NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066665_10774663

Scaffold Ga0066665_10774663


Overview

Basic Information
Taxon OID3300006796 Open in IMG/M
Scaffold IDGa0066665_10774663 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)758
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002423Metagenome / Metatranscriptome560Y
F029835Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0066665_107746631F029835GGAGGMNNLSQPPQPAEPDVVLLFLGSFFEDLLHAPVRDDAKLDALAMQILDEGPKTLLGLVIRAGAEKWLRRHLWTLAFDSLSPLEQGLRVVIDSAMRIDCDPARKPLQKLTDEIAE
Ga0066665_107746632F002423AGGAGGMAPKPKPVRLVFIVGMVLAMALTILTITADRDLAAPSSSPISHPQLSLLY*

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