Scaffold Ga0066658_10068268

Overview

Basic Information

• Taxon OID: 3300006794
• Scaffold ID: Ga0066658_10068268
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1583
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000415	Metagenome / Metatranscriptome	1168	Y
F020334	Metagenome / Metatranscriptome	224	Y
F061747	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066658_100682682	F061747	GGAGG	MKVLKAESTGAEVKVWCESCCIRVAPNEERTVVHGKTYHSHCYSKLNGKPKVDVQGSQA*
Ga0066658_100682683	F000415	GGGGG	LDERFSGEFSAALLAFRAEAVVYCRGISDTVAREYAEEYAAMLQNRAKGIEAQLPRIPSGLFEPNRNLIRSTLDRMWEKYFPDK*
Ga0066658_100682684	F020334	GGAG	MKDPKVIFRYLGFQALSDGGRRFDFSFAGSDASQHVISVQAPHDLFDGPDPMSIQECPGICYETLKCHVAGWSAVPASISLTSAAVVQ