Scaffold Ga0066658_10015499

Overview

Basic Information

• Taxon OID: 3300006794
• Scaffold ID: Ga0066658_10015499
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2891
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019111	Metagenome	231	Y
F036179	Metagenome / Metatranscriptome	170	Y
F039071	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066658_100154992	F019111	GGA	MEASERDENELRSQIIDQLEQSLTMSREMMMNQKLDPRTREKWTQLHTNTAQVLNTVLRDKQYQEWERRLKELEAAGRIPRKTAWSGDASNGASDRRASP*
Ga0066658_100154993	F039071	GAGG	MTQKATGQESTDDLLASIRRLTKIVLEKLEQGSNEGTLDQAQIRLLGSIATRSLGLWQDALSPRQRRGLRREVLTLEEQLPNQTIKKSVEE*
Ga0066658_100154997	F036179	AGGA	MSESEDTDIVTAPTSIVRAPTDITTLNLSLAKPAIPSQNSLAKVTHYKLDLDTILDGLIPDPLPESGGKDNAIHHLNIIILESQTLAKPRWRNRFLRR*