Scaffold Ga0066658_10000953

Overview

Basic Information

• Taxon OID: 3300006794
• Scaffold ID: Ga0066658_10000953
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10233
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024084	Metagenome	207	N
F039560	Metagenome / Metatranscriptome	163	Y
F048886	Metagenome	147	Y
F063566	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066658_100009533	F048886	GGA	MVVLGPVLVAGAASSCLFTILSGNIFACANVLPVFIGGGALFVAGIITCLVGVIVSEPNPRPHPPAGSMSAPQAGSVTCKKCGRVNAFGLFSCPFCGQTSS*
Ga0066658_100009535	F024084	AGGGGG	LKCNAEILGCRDLPPPKKLLQLQAKINEDLLKASLPEIRIDGFRLPDQALEITFERETVIGENRDRLWEIINGHYKKLLRDLELKE*
Ga0066658_100009536	F063566	GAG	MSTRGPAVVRVIERSWSSIPGFVKILLVIQAITIVVLSGWIYNEYVNNQYLQVYMLSLFQGKGSFFAIVGFGGLLGTALVGLLLKAGNILGEIEYLSEEVGNGIETNTASVSRSAQVPVRRIANRAPRAEIGRLHGSMRRWKHQSDYQD*
Ga0066658_100009537	F039560	GGA	MESLVVPPTAEPRGSRIVGDEFFFLKLFLRYTIDSASRVVAAPIETELFGVETRVEQRGFYSSTTVSPVL*