Scaffold Ga0066658_10000471

Overview

Basic Information

• Taxon OID: 3300006794
• Scaffold ID: Ga0066658_10000471
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14644
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004922	Metagenome / Metatranscriptome	418	Y
F014113	Metagenome / Metatranscriptome	265	N
F093626	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066658_1000047110	F014113	GAG	LAATAGAFNVPLKCTPEETKHFVEPAMKEAESSNFTGALEVVNAGLNAHPASEGLLFLRSYFCYKIADSISSELSTLPQPIQPLGEGVLMVDGAMTNQMLGRFQEIVKVLGDAEEAINEILQVNPRNNEVTAFRAYIDSKLQKLGQESENMRMTFTNTPNIAGNFCVGCRKNISFDTQTVVFRKTSSPQLEVWHLPCFKQMGNKN*
Ga0066658_1000047118	F004922	AGG	MCVTAVVKCWHCGEWFAKQANRREFESCPFCGKGFEQLSVEAQRAVKATLAPFFEVPHLKERPLTT*
Ga0066658_100004717	F093626	GAG	LVQMRPRTDIVIPVSWLLLPLASYLLWAVFAVAWWVAGAGVETSNLTLVVSGLGIVGLAASAAASYVVFRLVNRANLHSSRSRALLWNAISGLESRVGTAGQGALLPLSSAEENLYRLFHGDRESSAVLWALLASIPAIGWIFLVAALWFLSRHLAKHNRLEGLVLEDVDRTMRGAGLQGITVKHSPVGARDVLGIAVVVVSLVELLSVFLLGLAGGLVLIYLTVGASSLIWLDLSIRDPTFHFSSHSQFEPEILRSLPDATVGGGSIGAA*