Scaffold Ga0066658_10000244

Overview

Basic Information

• Taxon OID: 3300006794
• Scaffold ID: Ga0066658_10000244
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19940
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016384	Metagenome / Metatranscriptome	247	N
F016650	Metagenome	245	Y
F055614	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066658_1000024416	F016384	AGG	MSLTRNLDFCQSGEGSQAWSEVLGLREDFKSHLSWVMGLGHLSETFSRHAIPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKEASFTSKLSRLDVREPSLYKLTGETDTSVLPVLSELGHGWVRMDQPLTGMGASLPVSAASATYSSRDIPELLRLTSAVKRFRELLSKTMSQWSSKLDRKDSPPVSKGS*
Ga0066658_100002444	F016650	GGAG	MTVHETVAGTEADKLQMELHEVFSKILSHARRIDMTMALGDSNEALGQVRELEAYLERGLVVLSRPLTHDP*
Ga0066658_100002448	F055614	AGAAGG	MFDHQPERTEEEYDFKLFFVRILEEKDWTDKLESAVVKVRNRFHPSNTDTELSRALKALIPDIREVAKVYDEMTTGYKEFIQNVLDAKQSWVSKTKVKTERSKSTEPMRHRTHHK*