Scaffold Ga0066658_10000018

Overview

Basic Information

• Taxon OID: 3300006794
• Scaffold ID: Ga0066658_10000018
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53946
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (81.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001047	Metagenome / Metatranscriptome	793	Y
F013075	Metagenome	274	Y
F016652	Metagenome / Metatranscriptome	245	Y
F037660	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066658_1000001812	F037660	GGA	LTEESAAKRRTYPRATAIVGGLIAGVVAGLIAYLIVGIVGFIIAFIIGAVTGSRATLLANRAREQPS*
Ga0066658_100000182	F001047	GGA	MRETIFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREDKFTLAIKQFENLMIDFLRLYQPILDRLRSYREGMQKEITALRSSLATVNGMLEVSRGFEGLAPRIQQLEANGQELDANINEKMKMANKIDDLFNRIRPFQAGGAGLMGRDSLSDVLAGMPKDLFPETSEPANEKTRKTGARN*
Ga0066658_1000001832	F016652	AGGAG	MVLIGAVFVLLGIAAESLYISNEKVAYNGAAISANAYMISGLFLIILGLILTLSGARIPKIRIPHV*
Ga0066658_100000187	F013075	GGAG	LPSEFLPRAHSKRLGELDASNWKDLETGRNTSRIDPAIRGIVSSLNRKGYRTFSSCSGGHWANLRRRYDRHESGYVAFSPPSRIPFVLYLALREENQDFMFEAEAVIHDGNGDRRETIYTQLDWQLLDQRKPKLRYYENLFSEIRDAIDSLPRRQDGHKEVLTGLLGKPHLPLGSEIVSCQMKRFSR*