Scaffold Ga0098055_1233101

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1233101
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 694
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044547	Metagenome	154	Y
F065107	Metagenome / Metatranscriptome	128	Y
F098028	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_12331011	F044547	N/A	RNPEDLKAMIDMLAKISFENVLMALTQAKMDGNIPDRNTKSEIKTLLEIVKSINDLNSKITVTEQKEFNKEGDISNIFRQIKSQKSG*
Ga0098055_12331012	F098028	GAG	MGIFDWFKKEKFVLPPEEYQEELVRQIEEKLKTATVSEKTKLTYMLANQLMFLNQIKNKKKPKKPIRLNSKGKWVWVEDG*
Ga0098055_12331013	F065107	N/A	MVRPTTEELQERQEFMQSISDCANSPSKFSEVFLGHEVFDYNKKYVDCKDRFIVYRSGRQVGKT