Scaffold Ga0098055_1115092

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1115092
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1046
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F008924	Metagenome	326	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_11150922	F025411	GAG	MSITRVYRDRDNNIKVEKFSFEEVKKDLTKFFSHDNRISNRKNKNETKRLIKHSTDS*
Ga0098055_11150923	F003531	AGGAG	MKRKKWTENETELARQLLKKHSYATVGRMLHRSKNSVIGQFYREKIMNGYTPDPFSKYTRKKERNIHVNN*
Ga0098055_11150926	F008924	AGG	MNRVEELDLYKEYRHAYDKATELEFFDKQQEADYYYEYAQQLKKKIDNGETILY