Scaffold Ga0098055_1081575

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1081575
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1272
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F048575	Metagenome	148	N
F074146	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_10815751	F074146	AGGAG	MISRGYELTEFRNKWKTIYSKTFLNKYIPIHEDVWVDDKEFIETMKKPEGERYIWTVLEENGTWIVTSGYHWVNRIGFIITKNKWEHNRNIEVKGY*
Ga0098055_10815755	F019393	N/A	MKDGVSIMYSELRTYTNISDFIKAYEGICYMFDIKIKKLDKEIVLLHDTKWKLVKGKMTCLTK*
Ga0098055_10815756	F048575	N/A	MAMLQNSLMLDEEYEYEVSVLKLWKVYGEEDPYSAIHLAMNTLRYPNPNVPDEEIEEHLSELWDERWSEYYV*