Scaffold Ga0098055_1052171

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1052171
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1648
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004989	Metagenome / Metatranscriptome	416	Y
F099860	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_10521712	F004989	AGGA	MSIELEEMTAEKERLEGDRKTLLERLQEYQQAVTQTQQQIQAIGGAIQTCNFFIGKIQSPQESEEGKESSSDDS*
Ga0098055_10521714	F099860	N/A	AAVGNTTVNSMEAVGAEWDTIQLNSTDGAPESNAGEKIILEDASESDDGDMTFLQMETQTTGTAMNFYFTIAGSDGAGELSVARQAITLNSSTFKEAGDTETADSGIMQQVSAEIASAAVVIT*