Scaffold Ga0098055_1046928

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1046928
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1750
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025388	Metagenome / Metatranscriptome	202	N
F039091	Metagenome / Metatranscriptome	164	N
F042282	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_10469281	F042282	N/A	KQKTMAKRMSQQKQQEHTLPDEIAEVTSTTPVEAPTASVTPDQIADLILKGSDETKNAIRKALDLDKTHTRQRKSPITNSQVRNHVRAVGEVTHEPGFVPAPPSRIADRGEEAVRIWQDRWLDNNGDNLSEYDLDQLAATAHQ*
Ga0098055_10469283	F025388	GAG	MTNLQILQIALRRVGLNTGSSTFKDSARDYLNLVTQDIASREKWNWLFKSSTFNTTNGTRTYSLASDVVAPLSFRNTTEDHVILIMSTQDIDAADPDASINGDPRWAAIDGVDGSGNVEVTLYPEPDSTDTIAYRYYSSIPTFTSSEDNDSITPYVAAVCQPALIHGISALYKQEKGDDQGALSDKQEMERVIAIAGRQNMNVQGNRTYRMRRADDHISGKFSFQPTEGSIG*
Ga0098055_10469284	F039091	AGGA	MPIAAESLRLGPWRSGVNYSLPAEDMPPDGLYEMENCTVGLAGEVSKRNGFAKYNSSAMNSGATVTACGQVVLAGTEKTFAFAGNKFYDVTGGTATDRTGSVTITAGNDYTWDWVLAGSTLIAVNGQ