Scaffold Ga0098055_1017180

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1017180
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3137
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005352	Metagenome / Metatranscriptome	403	Y
F062792	Metagenome / Metatranscriptome	130	N
F090424	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_10171805	F062792	N/A	MTPQEIDDYKRKWRMGSYFQHHTHTDLRNACVEWCKENCEKQEWDIKYFTDIYGDTIRFEFESHFNEFGEWYKTRW*
Ga0098055_10171806	F005352	AGG	MNHPALDKPYIQLICHPYEHATSVNTRITIDVMQKELSRDDMLEVFETFMKSMGYHFEENETLCITL*
Ga0098055_10171808	F090424	GGAG	MIKVTTEGKRFPEFDTFIDECIVALFPEDAQYDISIRFTKFIEKTGLYGGLCTGDRVSSDIKVATHWKYEDGEHVAYEPHEIAGTLAHELTHAKQFCKNQINMVDHVWKHNGTNTDCEELEYAETPWEVEAYAYESILTDLLWENV*