Basic Information | |
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Taxon OID | 3300006793 Open in IMG/M |
Scaffold ID | Ga0098055_1013435 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3613 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (7.69%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005491 | Metagenome / Metatranscriptome | 399 | Y |
F011658 | Metagenome / Metatranscriptome | 288 | Y |
F021776 | Metagenome / Metatranscriptome | 217 | Y |
F039092 | Metagenome | 164 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098055_10134351 | F039092 | N/A | KQTGKTYSVDSEDKVTVTHNHDSIVSVSGEYFKNKYTGEWLSELEVEQAMCSRYEEDESNKYY* |
Ga0098055_101343510 | F021776 | N/A | MTKEELEVKISTLQTLVIQKNEELSEYAAQIERLNDELKDLNKPKLTPMQLDELYQAIEQGIESFDFDDQDNYETDFHIDYDNRIAIESMSFHNADELLRVVYNEARELFAEAKLPEDEISTQEHLNQH* |
Ga0098055_101343511 | F011658 | N/A | MKTLWQQLKPEIKESLNDQEEKYPSMVKAIKIALKDNYIWSHLSIGEVRDIVYFTDYTYASLSSYDWSYGEKFITCED* |
Ga0098055_10134358 | F005491 | N/A | MSAFYKDTRFNGKLIRLEDVIDEVYNRALKTIDDGLYELLNDKDEDEFYMDYKEAFGHIIEELQKFHNVEE* |
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