Scaffold Ga0098055_1008121

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1008121
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4855
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F094536	Metagenome	106	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100812112	F002221	AGGA	MSNYLEESLKDKLKQLRVYEAETKVKWGNFKRIYKMVGVDFEIKFLKAEQLLKTSLRNDPPKKQIAMVEMMLRAYEQLNIKCEESGYIMIQPNAKCFTFDKKTALICDTDDEKPVLELIHKNEKDIMIFSIEELLRCIPNDFMKAKELLSKLDKSVNIQRVDYV*
Ga0098055_10081216	F094536	AGG	MRVVLKSNLNQVRKELDRKLNKKDFNKILARSMNYTGERVVNAERAHLKDRLDRPRPQTVESVVISQFAKPKSNKLAMVVIVKDFAAKYLRYIYTGDDEPARRQKYASPTKDGEYKKGKFGNIMKLSAKGGLLNKVDRTKDSQRKGSRFQGIPKGKGSKTYGIWERQGVKGREGLKLLVAYTPFIRHRKFIDFFKVGEKVIKNTFHKEINKQFKRHMKRR*
Ga0098055_10081217	F099546	GAG	MSNKPQIDVSQLKKQIDKGKSLNEVVMSLGKSKSTILKVANENGLKFDKKSPWENL*