Scaffold Ga0098055_1007894

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1007894
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4940
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F016899	Metagenome / Metatranscriptome	244	N
F099109	Metagenome	103	N
F099342	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100789414	F000913	GGAG	MKHWEIDHYGEHIRIEWNESATFNLQTAIGGEWVDYHCFTCYGIDTEQEALEHAYEILNESIEDLI*
Ga0098055_10078944	F016899	AGGA	MAEEKVIMFKKYMLEGTLDPEIQAVFKAAADISNGVFSLQEASNHYKVHPSVIVQFIAESTEYDMIFSKFTEEKQ*
Ga0098055_10078945	F099109	AGGAG	MGRKIRYYRNETTDPRLEKGKLYTMHELAKRVKQSPTTIRSRVGTGDTVTDEHFISKKVTRSIWPVFETEIQEKSSQWLRRKL*
Ga0098055_10078947	F099342	GGAG	LSNATDFLTNRERDNMSEDYREAMSIARLQGQDFHDWTQTFKPDYRELVVIDSDGCRTFDLVYTDGDGGVMVFSNYSEIFNDKGITMSVVGGYCDIAFEHMQEIMAYMEDEMERMTQALDNERE*