Scaffold Ga0098055_1005069

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1005069
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6377
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003637	Metagenome / Metatranscriptome	476	Y
F072428	Metagenome / Metatranscriptome	121	Y
F104032	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100506914	F104032	AGGAG	MAKVYGKSQYSIGIKRKAIDNSSIFLKSDAATDTAYQLLPVINVSAPVLNLIESGEIRSNNAGMIETNLDQFRSKKGAFVTLDFELPAEREGIVRLLSNVLQDHTQTGSGPYVHTIQATSGSPLTRPDFDALDSADSTTDGIPSVFDIALYGPAANQDKLITSAVLQNLTMNFDMTDGRLLLSGSFYSGFVNSGFKVGQNLTGGSSAATLMHTDPTEIESYFNTKTLDIAGSATNAVITGVSFTFENNLARVGRDENGDAENYAFGVPSVNITGEISLMYDDNFHDGAANVVQDFLNGTPATLILQQGDGTVGTAGEMNITAEIYSTAVNYDLNADTGAIITIPFKVIQPTASGAVSGTAFKFEYADNKSYTSW*
Ga0098055_10050692	F003637	AGGAG	MAKVIVEKAQEVIVADAPKMVEIKHTRVMQDASGKDVTVVDYVETKQVDQAISQCEAHKANLEVQLTECEAELADYIAIRDAE*
Ga0098055_10050697	F072428	AGGAG	MEFAETIRKIKELRAMLGAKTISDREKEFYMPELFKLIDTLEVPELIGEFSNEYIS*