Scaffold Ga0098055

Basic Information
Taxon OID	3300006793 Open in IMG/M
Scaffold ID	Ga0098055_1002946 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006793 Open in IMG/M

Scaffold ID

Ga0098055_1002946 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8740
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (22.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8740

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (22.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010650	Metagenome / Metatranscriptome	301	Y
F012872	Metagenome / Metatranscriptome	276	Y
F014505	Metagenome / Metatranscriptome	262	Y
F016957	Metagenome / Metatranscriptome	243	N
F025860	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100294611	F025860	N/A	MNTENIYQVLDDLETFANNIGSEWMKERVAMLEAQIANLENQSTL*
Ga0098055_100294614	F012872	N/A	MNLHFEGNRLYYMEKEAELHKALQYLSSELSDKESMTQEQMWEVFHICADTSAVYRHITDYFTTLDKMILDARITNDKLKQELYDLKKENTRLNKALENYMNEF*
Ga0098055_100294617	F014505	N/A	MGRIERFYRKNFKRLTGFIKEYTDGSYSVAGDIVQMVFLRLLEMEAEGRVNFYDEEDSLNFFYVYRSCINTALKYQRAKRKVNKVSLDDLDFDFLEEAGLPEERQAMERLLDYMEQEMDDFHWYDAKMIRIHMEGTSMNKIHRETSIGLTSIKNTIKNGKARIHDRLREDWEDYSNGDYNQI*
Ga0098055_100294619	F016957	GAG	MQLRNYLKDKRKLTESRTAVCVDVGKTGEALFKELTGALKSNLADDKKHIDFYWGDMKVDVKGLKKMHHTGYILLEFVNVWGGDGWCSKKSKAEYIAFQFPDAFYIFRKKHLRVRALDMCEVYSPEVVTRKNYIPYEDGLYKWLGRWNAQDVFTYLKFSDVEDLIFEVLPYKIKEE*
Ga0098055_100294626	F010650	GAG	MNQFLRIANARLKKVYPNKMQRKAWAANMWRRYIERQNVEHDL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098055_1002946

Overview

Ecosystem & Geography

Associated Families

Sequences