Scaffold Ga0098055_1002276

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1002276
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9984
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F069335	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100227612	F069335	AGG	MIKGQKDWDYQFVSDCEIVNVFIPKNTHLAEYQTLKQKLLLLQQVECDNHLTSSIVNLYNTSSIGWIEHVRKMGHKYVAFWFDGCWPKTDGIEKKILTYINRLEKKDWITAVHPKYVDSLMLLNIDEFIAWPAKAPNFGKYDFWAENWLGDSTVELSKTIERNIVVGAPKTDPVNFLNGLMGKKYTDHTIARGARVIIKRKNIPSSPIYFVNTEPSSPTVADPIKNTIFEQYVGATAGFNLLYYAYTYGLDIDSTKFVWYDFDAYS
Ga0098055_10022762	F009293	GGAG	MTRIAKDIIAGNDFIVNVFDAKTDNLEDNFKLYEAFESGWPVVIKNLTIPQLDYDYYDDLPDWTIPDNKWIMPWYNSHIKKRERMRSERNWTEEQIDLFHKKHKQANNGWNELFDMLFPHYKTNERMLSHRYNTLVENKLHLDELDEQHTGLEQQIRMFVQLDKKRPRVLSFGPDLEQMYNMYKDKFNLGELDKDNIHTFISEMRNRCVWNEEKWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFEADILNESLLKPELCMVERIKKF*