Scaffold Ga0098055

Basic Information
Taxon OID	3300006793 Open in IMG/M
Scaffold ID	Ga0098055_1001376 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006793 Open in IMG/M

Scaffold ID

Ga0098055_1001376 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13268
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (34.78%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13268

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (34.78%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F015724	Metagenome	252	Y
F039113	Metagenome	164	Y
F047028	Metagenome	150	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100137615	F047028	GGA	MVNLSRGAADLVKTLFKGEEKERMISAGVVRTILADMIKLYFEHKTAVGKGVLVFNPVQPELSNYLTVKDLENDLAVAQESMNRELEELFELIIKVIQKEDSNELALIAMIQDSEVAVHLIDPVEANKNIDELSNGIIF*
Ga0098055_100137616	F039113	N/A	MDIIKEIKQIKVAVESIDVSLQLLASENTGARRTSGFVSKRVVAQRLNIPSVTLDKLIHQGIVSDGKTGLIEGTHFCKIDPVEKNSSKFLYDIHSIIHSAWNNFKNG*
Ga0098055_10013764	F015724	GGCGG	MARRKGSDNFGFKSPNEKSPQSDFSFGGVRGASTTNQLNKIIPIKEKFRPNFNLKDFSVLYDYQYASMWTRWRRGYELYMYANQAYVGLNYSFRYFISGEAGVGAALPGICYMYPSMSQDMAMRMVVIRPRDSFNFLDFGFSIKSIIPTSTENVYAIELSSNFGAPISFFTGEVLSDRFNPDGTEKATYNSYVVIGVGNGPNALVPNFAPIFNTIFISLDTDNSWKVVDNSTLKAPADLPTPGDYFSTEMRFGCNCPDYLGREEFNLYKYNTKRQYPYTRVQDLKPGVYDVGADFTKEGQSREVDTRDYTGYTRDFGFIYIQKLLEIAEYRDNEKVYSDPNLIYWRPRWCKHIYASFWDLQNKFGKDVIEPTWLNQPSDEPMDGAYLNQFYTNMEKQTSFKCREKRLSWWEKFSPSRNTTPVHMLYPDMNPTVTKVLNFDTLNSGVTNPLNPSGFEMFDIDQYNPFLPPDPETTPRIDGGQYFNGVLVSGASLIYDGGSYVNGGLTPYPSFPSITNGGTY*
Ga0098055_10013767	F008401	N/A	MEPTQFLTIAETAKLLNCSAGFVRKRIALTEANQSGGWPKEIFVNLQPNGAKSLYRVNQDALESYLNAQPEEAKVEETQVCSVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098055_1001376

Overview

Ecosystem & Geography

Associated Families

Sequences