Scaffold Ga0098055

Basic Information
Taxon OID	3300006793 Open in IMG/M
Scaffold ID	Ga0098055_1000806 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006793 Open in IMG/M

Scaffold ID

Ga0098055_1000806 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17956
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (9.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

17956

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (9.52%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	15
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004479	Metagenome / Metatranscriptome	436	Y
F034539	Metagenome / Metatranscriptome	174	Y
F050748	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100080610	F050748	N/A	MKDNALAIGVSSLEFTNILCSYYPKGIKENFDIYLFVDDSKIDLDKLQGIFKEHDLDIFKNAKIIILNDLYDYYIEKHGYEGKAKEFLLSHGCLFKILMPIYLKEKFGVKRTLVSDDDVFILNDISYMWEEYEEFGIKKENLFYIRNKDKHEVMAAFNEIFESDFTLDEMNALSINAGNIIYGEDPKLEYYFERFMKHPFVHHQYFNFTGYTSWTVEQRFHHFNIHRYLAEGRKVKFTESKDLRLMQNRDKMMKAGTPPDKYLKVVVPSIIHYAIGTKKPLWLNDFLPGLEWRYGFVYEAKYELKDILYDKSWTPPPFKSVQKTGFKLTSDLKTKSIF*
Ga0098055_100080615	F004479	N/A	MHTGKVLVGNSGDRVYLQDNKVIKEAGVYPIKFKQQMDWLQNCTHPNFIKIKPISDTSFEMKKYSTWYDKICEQPLIKSIDQLDDLIHIINDFDGYGADVDVRSYLDKLEGRTGYKYEGELNATSGWGFVHGDLTVSNILYDNDFIFIDPRGTEEQNYYDYGKLMQSFVMKYEAHIYNERNSKYLKFCREAENIMYEWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHELFDELEIKYSK*
Ga0098055_10008064	F034539	AGAAG	MLPKNLNTAKLKVKHVLGNHTSLPNYPDSEDIIYELIRDYCGKVAKEIKFTNVSLKKKYSLDDEHANSIIMQLRNDKIIKVSLSNSAYTTYEVITNPYE*
Ga0098055_10008069	F002407	N/A	METKINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTSDIFDADIKEPVKVSFYNGTKVIDALSHFNGDVQGRIKYTEYDGELMASDFILENEELQINLACTDPSLSFMEMSKEETDRAFGVESKMFDFDLLTTHVDKMKSLFNLDKDEDIFTLYIGEKGINIKGTSYDATLCHSYDSNVEKGSKVVIYKKYINLLDKENYKVSVCENKVVFKSLDTNTHLTVAVAITDED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098055_1000806

Overview

Ecosystem & Geography

Associated Families

Sequences