Scaffold Ga0098055_1000718

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1000718
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19246
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F029449	Metagenome / Metatranscriptome	188	N
F095562	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_100071814	F095562	AGGA	MEQTDDPNILRKQVDKIEKEVNQLEKVKEEIQNECKHKGETFVQFDKSNSMKKYCSECKRELGYPTKAEQETFLGKKQ*
Ga0098055_100071817	F002033	N/A	MSKFNKFFADHGIKIVLALMLLTYFKSCSIDSEVERIKKEQRILTTEIDTLSSQIVNEEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKED*
Ga0098055_100071818	F029449	AGAAG	VAGRVPIIPGVPTPSDPQCSLTYCGRIIAQVDCIKYIMQGTTACIDIQLFGSNDLPLNLDNFCDIQIQLTNELECVVANFWWPSIPSGSKGFLIDILQFTDTSGVIHNEGLIRICLSAACTKATGPGAISAEILLTECPGGHYPETGTPTGVGPTGAFPTGFEEVYGIPCLWVATILESKIAKNGGDSGCGSGGFVTGVI*