Scaffold Ga0066653_10150616

Overview

Basic Information

• Taxon OID: 3300006791
• Scaffold ID: Ga0066653_10150616
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1132
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F006088	Metagenome / Metatranscriptome	382	Y
F006226	Metagenome / Metatranscriptome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066653_101506162	F006226	GGGGG	MNSAVARRLALGDRVVWIGEDDYQPSGPGMITRITAHQVEVRWEDETARRYRRAQLHNLRHRKLVCELHEARSA*
Ga0066653_101506163	F006088	AGGA	MSSERDTCLQKANDAKQRAAQATEPFMKRAYEKVAEHWTLLARLESLIGNEKINEDA*
Ga0066653_101506164	F000037	AGGGGG	MESDYLILRRALAFRPSGDWNDDDYDVLCNGVVVGRIMQEAAVPVGMSWMWTLAFGHHEERTPAHGYAATREAAMAAFAKSWRR*