Scaffold Ga0098074_1029042

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1029042
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1622
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F004549	Metagenome / Metatranscriptome	433	Y
F007093	Metagenome	358	Y
F081884	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10290422	F004549	AGGAGG	MNTKKFKSVAVAIETYKLLKKIAAADDRSAGMQITYLVKQEAKKRKLVNKITA*
Ga0098074_10290423	F081884	AGGAG	MERPIINLKNYEEAKEFLKRTDFVHTNHFNFYKDDVFPNLNMPWHLELEYWIDTRGYHDHFLIMKSKPKREYPEIYATDRNSLPGDDEEKRMDFDYYLPGTRIDESWFQYAPEYLARCSYEFVGFKKFSSDTELSKSDKEKLKRDHDEVIRYESDDYKSKEAV*
Ga0098074_10290424	F001689	AGGAG	MKLKKDYEDTFKEGFRLGVRLTRAKACLENARNAKLLKDEQMFKLQMEFASSWTDLAKNAGRKFTPTAAHQPEQSAFDFGDIEYQEHLSKLPFKETG*
Ga0098074_10290425	F007093	N/A	VIKIWLLISMISLPGMPSVKHTAELYFNQDICENRRVVIENSIYDRAAETGINPVYVETWCLESNMFVENSS*