Scaffold Ga0098074_1026148

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1026148
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1727
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035273	Metagenome	172	Y
F040601	Metagenome	161	Y
F046983	Metagenome	150	Y
F085562	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10261482	F040601	AGGAG	MANVHYIIKVIEPEKEYLKTFENGKLDNCRQLAQEYLWSCPEGTKYIYVATRIKND*
Ga0098074_10261483	F035273	AGGA	MTKTIPPQPYKVWDRQTASMTEYTPKEVYKLVVDYPGTNRQLEFIGMDRGSCILQAEVAKEESDTVMLTVSEESVTLYNKEKI*
Ga0098074_10261484	F046983	AGGAG	MKLPEYLNKESSHKTLGVNTMSLLGLSLVWGHMLNLISLWFLPLTFVCILAGFGNEIRKRD*
Ga0098074_10261485	F085562	GAGG	MDEFTKRSTAHMDPAVVKKAVSIIDKNPELKKIRSIKDGESYSEINSGVNDQQYKDNYDKIKWTKDKKTKPKFRVKVNGKYIDEEE*