Scaffold Ga0098074_1007892

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1007892
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3677
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F021750	Metagenome / Metatranscriptome	217	Y
F091790	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10078927	F000325	AGGAG	MKTAEGNDKLGKNCIVVSRPVGKTCPSSCDFLGDGCYAEATENQYKNARTAAFQNVITEKGRIRSMILDAIKRGKSIRWHERGDWFNDGVLDEDYVNNVCAACESVIESGYTLPDMWFYTHIYDSRLAAMNKYMSVYASVHNADDMIAAKLAGFTMFAWCDKDMAIAPKRPRGKIKKAVWQAELPKLVVLHGEQFITCPEIRKGRDFVTCTGNKTSRACNMCPTGKKNVLFPCH*
Ga0098074_10078928	F021750	AGG	MKINRYSYVTLEDFVDAHELDLYDVDDILLNSKYSYGTNDDTLVGYETLCDLCDTRPLSTYRGIDLMVSLGS*
Ga0098074_10078929	F091790	GGAG	MFDIVGMGSECTLFRTKMGLFKEYYSKSHAIEAHNIQTELSSIHLAPDVYSRVCRVRMPEGNLSNYGFYTEEAEPLDCGCDCDCDCSVNTWEDRLAICEMVEYWTDWEFTDFHQGNFGFITREDKKFLVIVDCGHKGFVEKE*